CIBMTR Reporting Implementation Guide
0.1.6 - Trial Use 1

CIBMTR Reporting Implementation Guide - Local Development build (v0.1.6). See the Directory of published versions

: Cytogenetics-Example-1 - JSON Representation

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{
  "resourceType" : "Observation",
  "id" : "Cytogenetics-Example-1",
  "meta" : {
    "profile" : [
      "http://fhir.nmdp.org/ig/cibmtr-reporting/StructureDefinition/cibmtr-cytogenetics"
    ],
    "security" : [
      {
        "system" : "http://terminology.cibmtr.org/codesystem/transplant-center",
        "code" : "rc_99999",
        "display" : "99999 My Transplant Center"
      }
    ]
  },
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: Observation</b><a name=\"Cytogenetics-Example-1\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource Observation &quot;Cytogenetics-Example-1&quot; </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-cibmtr-cytogenetics.html\">CIBMTR Cytogenetics Profile</a></p><p style=\"margin-bottom: 0px\">Security Labels: <span title=\"{http://terminology.cibmtr.org/codesystem/transplant-center http://terminology.cibmtr.org/codesystem/transplant-center}\">http://terminology.cibmtr.org/codesystem/transplant-center</span></p></div><p><b>status</b>: final</p><p><b>category</b>: Laboratory <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-observation-category.html\">Observation Category Codes</a>#laboratory)</span></p><p><b>code</b>: Genetic variant assessment <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#69548-6)</span></p><p><b>subject</b>: <a href=\"Patient-PatientExample1.html\">Patient/PatientExample1</a> &quot; DOE&quot;</p><p><b>effective</b>: 2022-05-01</p><p><b>method</b>: Fluorescence in situ hybridization <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#426329006)</span></p><blockquote><p><b>component</b></p><p><b>code</b>: Variant ISCN <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#81291-7)</span></p><p><b>value</b>: 47&lt;2n&gt;,XY,-7,+8,t(9;22)(q34.1;q11.2),i(17)(q10),+der(22)t(9;22)(q34.1;q11.2) <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-ISCN.html\">International System for Human Cytogenomic Nomenclature (ISCN)</a>#47&lt;2n&gt;,XY,-7,+8,t(9;22)(q34.1;q11.2),i(17)(q10),+der(22)t(9;22)(q34.1;q11.2))</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: Genomic source class <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#48002-0)</span></p><p><b>value</b>: Somatic <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#LA6684-0)</span></p></blockquote></div>"
  },
  "status" : "final",
  "category" : [
    {
      "coding" : [
        {
          "system" : "http://terminology.hl7.org/CodeSystem/observation-category",
          "code" : "laboratory"
        }
      ]
    }
  ],
  "code" : {
    "coding" : [
      {
        "system" : "http://loinc.org",
        "code" : "69548-6",
        "display" : "Genetic variant assessment"
      }
    ]
  },
  "subject" : {
    "reference" : "Patient/PatientExample1"
  },
  "effectiveDateTime" : "2022-05-01",
  "method" : {
    "coding" : [
      {
        "system" : "http://snomed.info/sct",
        "code" : "426329006",
        "display" : "Fluorescence in situ hybridization"
      }
    ]
  },
  "component" : [
    {
      "code" : {
        "coding" : [
          {
            "system" : "http://loinc.org",
            "code" : "81291-7",
            "display" : "Variant ISCN"
          }
        ]
      },
      "valueCodeableConcept" : {
        "coding" : [
          {
            "system" : "https://iscn.karger.com",
            "code" : "47<2n>,XY,-7,+8,t(9;22)(q34.1;q11.2),i(17)(q10),+der(22)t(9;22)(q34.1;q11.2)"
          }
        ]
      }
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "http://loinc.org",
            "code" : "48002-0",
            "display" : "Genomic source class"
          }
        ]
      },
      "valueCodeableConcept" : {
        "coding" : [
          {
            "system" : "http://loinc.org",
            "code" : "LA6684-0",
            "display" : "Somatic"
          }
        ]
      }
    }
  ]
}